Index

B

breads.fit module breads.fm module breads.grid_search module breads.instruments module

breads.jwst_tools module breads.utils module broaden() (breads.instruments.Instrument method) (breads.instruments.KPIC method) (breads.instruments.OSIRIS method) (in module breads.utils) broaden_kernel() (in module breads.utils)

C

calibrate() (breads.instruments.OSIRIS method) check_instrument_type() (breads.instruments.Instrument method) clean_nans() (in module breads.utils) combined_log_prob() (in module breads.fit) companion_relative_to_absolute_position() (in module breads.utils) compute_charge_bleeding_mask() (breads.instruments.JWSTNirspec_cal method)

compute_med_filt_badpix() (breads.instruments.JWSTMiri_cal method) (breads.instruments.JWSTNirspec_cal method) compute_starspectrum_contnorm_2dspline() (breads.instruments.JWSTNirspec_cal method) compute_starsubtraction_2dspline() (breads.instruments.JWSTNirspec_cal method) corrected_wavelengths() (in module breads.utils) crop_image() (breads.instruments.OSIRIS method)

F

file_directory() (in module breads.utils) filter_spec_with_spline() (in module breads.utils) find_closest_leftnright_elements() (in module breads.utils)

find_files_to_process() (in module breads.jwst_tools) findbadpix() (in module breads.utils) fitfm() (in module breads.fit)

G

gaussian2D() (in module breads.utils) get_err_from_posterior() (in module breads.utils)

get_spline_model() (in module breads.utils) grid_search() (in module breads.grid_search)

H

hc_atmgrid_hpffm() (in module breads.fm) hc_atmgrid_splinefm() (in module breads.fm) hc_atmgrid_splinefm_jwst_ifu_cal() (in module breads.fm)

hc_hpffm() (in module breads.fm) hc_kpicrvfm() (in module breads.fm) hc_mask_splinefm() (in module breads.fm) hc_splinefm() (in module breads.fm)

I

insert_psf_model() (breads.instruments.JWSTMiri_cal method) Instrument (class in breads.instruments) instruments_implemented() (breads.instruments.Instrument method) iso_atmgrid_doppler_hpffm() (in module breads.fm)

iso_atmgrid_hpffm() (in module breads.fm) iso_atmgrid_splinefm() (in module breads.fm) iso_hpffm() (in module breads.fm) iso_splinefm() (in module breads.fm)

J

JWSTMiri_cal (class in breads.instruments)

JWSTNirspec_cal (class in breads.instruments)

K

KPIC (class in breads.instruments)

L

log_prob() (in module breads.fit)

LPFvsHPF() (in module breads.utils)

M

manual_data_entry() (breads.instruments.Instrument method) mask_bleeding() (in module breads.utils) mask_interp_elements_too_far_from_bin_edges() (breads.instruments.JWSTNirspec_cal method) module breads.fit breads.fm breads.grid_search breads.instruments breads.jwst_tools breads.utils

N

nlog_prob() (in module breads.fit)

nonlin_lnprior_func() (in module breads.utils)

O

open_psg_allmol() (in module breads.utils)

OSIRIS (class in breads.instruments)

P

pixgauss2d() (in module breads.utils)

process_chunk() (in module breads.grid_search) propagate_coordinates_at_epoch() (in module breads.utils)

R

read_data() (breads.instruments.Instrument method) read_data_file() (breads.instruments.KPIC method) (breads.instruments.OSIRIS method) reload_charge_bleeding_mask() (breads.instruments.JWSTNirspec_cal method) reload_interpdata_regwvs() (breads.instruments.JWSTMiri_cal method) reload_starspectrum_contnorm_2dspline() (breads.instruments.JWSTNirspec_cal method) reload_starsubtraction_2dspline() (breads.instruments.JWSTNirspec_cal method)

remove_bad_pixels() (breads.instruments.Instrument method) (breads.instruments.OSIRIS method) rotate_coordinates() (in module breads.utils) run_complete_stage1_2_clean_reduction() (in module breads.jwst_tools) run_noise_clean() (in module breads.jwst_tools) run_stage1() (in module breads.jwst_tools) run_stage2() (in module breads.jwst_tools)

S

save_charge_bleeding_mask() (breads.instruments.JWSTNirspec_cal method) scale_psg() (in module breads.utils)

selec_order() (breads.instruments.KPIC method) set_noise() (breads.instruments.OSIRIS method) set_reference_position() (breads.instruments.OSIRIS method)

T

templatefm() (in module breads.fm)

trim_data() (breads.instruments.OSIRIS method)

V

valid_data_check() (breads.instruments.Instrument method)

visualize_miri_mrs_fov() (in module breads.jwst_tools) visualize_nrs_fov() (in module breads.jwst_tools)